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| Best Use of Technology (Administration) Private University | 2022 |
| Private University Website/Portal of the Year | 2022 |
| Excellence in Adopting Emerging Technologies Private University | 2022 |
| Best Private University in Science | 2022 |
| 2nd Overall Best University in Nigeria – NUS | 2021 |
| Best Private University in Nigeria | 2021 |
| Best Private University in Osun State | 2018, 2017, 2016, 2015 |
| Best University in Life Sciences and Medicine in Nigeria-NURESDEF | 2016 |
| Best University in Research – Nigeria Media Nite-Out Award | 2021 |
| Southwest Outstanding Private University of the Year | 2019, 2018 |
| Winner, Al-Sumait Prize for African Development (Health) | 2021 |
| Winner, Alexander von Humboldt Grant | 2020 |
| Winner, Audacious Sentinel Project | 2020 |
| Winner, H3 Africa, USA | 2018, 2017, 2016, 2015 |
| Winner, ICHEM Global Award, UK | 2014 |
| Winner, NAS Gold Award for Best University in Science | 2021 |
| Winner, Open Access Grant sponsored by INASP and UNESCO | 2017 |
| Winner, Seedling Labs Equipment Grant, USA | 2017, 2016 |
| Winner, UNIDO-Nigeria National Quality Infrastructural Gold Award | 2018, 2017 |
| Winner, World Bank-funded African Centre of Excellence for the Genomics of Infectious Diseases | 2021 |
